- Finch TV – Free trace viewer.
- ABI Sequence Scanner – Free trace viewer. Allows you to look at ABI chromatograms and raw signals. Helpful for troubleshooting; only works for Windows.
- Primer3 – Tool that helps you design primers automatically.
- ExonPrimer – Automatically designs primers around your exons. Input reference sequence and cDNA sequence and the program outputs primers that flank the exons.
- Tm Calculator – Automatically calculates the melting temperature of your primers.
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