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Trace Viewers
  • Finch TV - Free trace viewer.
  • ABI Sequence Scanner - Free trace viewer.  Allows you to look at ABI chromatograms and raw signals.  Helpful for troubleshooting; only works for Windows.
  • 4Peaks - Free trace viewer for MacOSX platforms.
 
Primer Design
  • Primer3 - Tool that helps you design primers automatically.
  • ExonPrimer - Automatically designs primers around your exons.  Input reference sequence and cDNA sequence and the program outputs primers that flank the exons.
  • Tm Calculator - Automatically calculates the melting temperature of your primers.